This research focuses on the analysis of soil- water interaction at the carbonate-flysch contact on the Istrian peninsula in Croatia. As a result of the interaction of surface and groundwater and the position of flysch and carbonate rocks in the geotechnical profile, two problems occur in the study area: numerous instabilities and the occasionally high turbidity of drinking water. As an example, the St. Ivan spring was considered. The paper presents a complex mechanism of groundwater circulation in geological structures at carbonate-flysch contacts, differences in runoff through karst aquifers and flysch rocks during heavy rainfall under current and predicted (climate change) conditions, and the mentioned geohazards as a result of extreme precipitation. The analyses carried out showed the decisive influence of the existing geological structure on the dynamics of infiltration and precipitation runoff, as well as the risks of pronounced spring water turbidity and instability events. The main drivers of these geohazards are continuous long- term precipitation for landslides and intense daily precipitation for turbidity. Possible consequences of climate change are the increase in precipitation intensity, amount and higher variation, which subsequently brings risks such as the increase in maximum runoff, i.e., the expected more frequent occurrence of high turbidity and the more frequent occurrence of higher cumulative precipitation triggering instabilities in the area.